[Samtools-help] Ssage of samtools pileup -c -f in new version of samtools mpileup

[YaoXia]

Dear Sir/Madam,

I have a scripts that is still using the commond of old samtools "samtools pileup -c -f".

I want use the new version with mpileup commond, but it seems that there is no '-c' commond available. In old version, it is used to "compute the consensus sequence".

Would you please suggest a commond that can do the same thing as "samtools pileup -c -f" in samtools mpileup version?

I would sincerely appreciate your kind help!

Best wishes,
Yao Xia