samtools-help@lists.sourceforge.net

1

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samtools mpileup / bcftools mpileup / missing sites

started 2017-07-12 19:41:17 UTC

2017-07-12 20:46:47 UTC

James Bonfield

1

reply

Using Samtools as a Dependency: Getting a large amount of binary in terminal window

started 2017-07-12 07:23:01 UTC

2017-07-12 13:57:30 UTC

Robert Davies

1

reply

additional header lines "@GA"

started 2017-07-07 19:39:22 UTC

2017-07-07 20:07:27 UTC

John Marshall

0

replies

Samtools-help Digest, Vol 101, Issue 4

started 2017-06-24 18:40:12 UTC

2017-06-24 18:40:12 UTC

Stephane Plaisance

0

replies

Help with mpileup

started 2017-06-24 01:25:14 UTC

2017-06-24 01:25:14 UTC

Maraike Probst

0

replies

[Samtools-devel] Release 1.5

started 2017-06-21 17:03:41 UTC

2017-06-21 17:03:41 UTC

Valeriu Ohan

2

replies

Rare variants calling

started 2017-06-21 01:51:14 UTC

2017-06-21 05:13:00 UTC

Peter Johansson

0

replies

Install problems

started 2017-06-19 19:55:08 UTC

2017-06-19 19:55:08 UTC

Matt Evans

0

replies

Ssage of samtools pileup -c -f in new version of samtools mpileup

started 2017-06-12 09:26:30 UTC

2017-06-12 09:26:30 UTC

YaoXia

1

reply

Unable to view remote bam files from 1000genomes

started 2017-05-18 23:35:41 UTC

2017-05-22 13:12:34 UTC

James Bonfield

4

replies

samtools merge issue

started 2017-05-12 21:08:13 UTC

2017-05-12 22:50:39 UTC

Margres, Mark J

4

replies

crai

started 2017-05-10 22:34:46 UTC

2017-05-11 18:11:27 UTC

Brent Pedersen

2

replies

Compile error htslib-1.4.1

started 2017-05-09 01:25:52 UTC

2017-05-09 16:36:23 UTC

Waldron, Michael H

1

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Predicted het GT where hom alt expected

started 2017-05-08 18:12:39 UTC

2017-05-08 19:26:06 UTC

Thomas W. Blackwell

0

replies

hts_itr_t reuse

started 2017-04-25 16:33:35 UTC

2017-04-25 16:33:35 UTC

clw

3

replies

problem with samtools mpileup

started 2017-04-20 11:52:11 UTC

2017-04-21 06:20:44 UTC

kenichi chiba

0

replies

phased vcf from phased Bam

started 2017-04-20 21:07:56 UTC

2017-04-20 21:07:56 UTC

Shilpa Garg

1

reply

rmdup question

started 2017-04-18 23:46:18 UTC

2017-04-19 20:39:53 UTC

Joseph Fass

1

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error messages when using the fixref plugin

started 2017-04-14 03:01:42 UTC

2017-04-18 18:27:52 UTC

Petr Danecek

3

replies

compile help

started 2017-04-06 23:49:02 UTC

2017-04-07 03:50:07 UTC

James LaGasse

1

reply

ERR: [bam_header_read] EOF marker is absent. The input is probably truncated

started 2017-04-06 01:25:48 UTC

2017-04-06 13:09:44 UTC

James Bonfield

1

reply

Help in calling indel

started 2017-04-03 21:24:35 UTC

2017-04-04 14:39:05 UTC

Petr Danecek

1

reply

help for samtools

started 2017-04-01 00:18:34 UTC

2017-04-01 22:36:36 UTC

Thomas W. Blackwell

3

replies

bams with malformed region names lead to variant calls using -l to be incorrect

started 2017-03-24 08:24:33 UTC

2017-03-24 22:20:00 UTC

Liyang Diao

0

replies

query about mpileup and bcftool calls

started 2017-03-23 15:39:27 UTC

2017-03-23 15:39:27 UTC

Prasun Dutta

1

reply

some samtools commands require sorted input - is the output guaranteed to be still in the same sort order?

started 2017-03-17 08:07:47 UTC

2017-03-17 21:18:26 UTC

James Bonfield

3

replies

how to uninstall

started 2017-03-07 04:51:03 UTC

2017-03-09 02:53:38 UTC

scar

3

replies

bgzip file index and fasta file

started 2017-03-07 00:09:33 UTC

2017-03-08 21:50:29 UTC

sebastien letort

1

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Problem Converting BAM to SAM on to Amazon-S3 Using Samtools

started 2017-02-22 19:01:42 UTC

2017-03-07 13:11:57 UTC

scar

1

reply

help for " samtools tview -d"

started 2017-02-13 08:48:17 UTC

2017-03-07 12:59:01 UTC

scar