samtools-help@lists.sourceforge.net

2

replies

read alignment number limitation shown in samtools tview

started 2017-03-03 15:14:23 UTC

2017-03-06 07:11:49 UTC

huyudong

1

reply

Is there a way how I can figure out how many reads have been removed by applying rmdup?

started 2017-03-02 17:13:38 UTC

2017-03-03 17:43:09 UTC

Christian Cole (Staff)

1

reply

BCF2.2 and VCF version interop

started 2017-02-27 23:06:57 UTC

2017-03-02 18:52:41 UTC

Petr Danecek

0

replies

Samtols paired call variant

started 2017-02-24 22:17:35 UTC

2017-02-24 22:17:35 UTC

j***@libero.it

9

replies

"Strand bias" in mutation calling with samtools-bcftools

started 2017-02-20 07:07:54 UTC

2017-02-21 13:58:35 UTC

Petr Danecek

1

reply

samtools fastq - is it broken?

started 2017-02-08 22:09:31 UTC

2017-02-13 17:19:07 UTC

Keiran Raine

2

replies

samtools rmdup help

started 2017-02-07 20:10:55 UTC

2017-02-08 10:59:48 UTC

Qian Li

0

replies

Getting nucleotide information from mpileup output

started 2017-02-08 08:49:18 UTC

2017-02-08 08:49:18 UTC

Özcan Esen

0

replies

samtools mpileup help

started 2017-01-18 04:08:09 UTC

2017-01-18 04:08:09 UTC

Pramod b.m

0

replies

rmdup options

started 2017-01-18 00:02:15 UTC

2017-01-18 00:02:15 UTC

Elle

4

replies

Zero Length Reads in SAM

started 2017-01-16 07:26:21 UTC

2017-01-16 18:00:36 UTC

Colin Hercus

5

replies

indexing huge BAM file

started 2017-01-14 05:16:59 UTC

2017-01-16 16:09:48 UTC

James Bonfield

3

replies

samtools stats error

started 2017-01-10 01:05:10 UTC

2017-01-12 20:59:19 UTC

Madolyn Macdonald

0

replies

help

started 2017-01-11 11:28:55 UTC

2017-01-11 11:28:55 UTC

neelakandan rakesh

1

reply

Samtools view -m

started 2017-01-10 21:19:52 UTC

2017-01-10 21:46:43 UTC

Devon Ryan

1

reply

Question regarding bam compression after sorting

started 2017-01-09 05:55:03 UTC

2017-01-09 16:31:11 UTC

James Bonfield

1

reply

please remove my email from the list

started 2017-01-05 12:52:14 UTC

2017-01-05 17:31:22 UTC

John Marshall

5

replies

FW: samtools sort for paired-end .bam cannot find chromosome name in text header

started 2017-01-03 23:05:07 UTC

2017-01-04 23:09:06 UTC

Holbrook J.

1

reply

Samtools depth question

started 2016-12-20 02:32:52 UTC

2016-12-20 02:49:25 UTC

Fauni, Harper (NIH/NHGRI) [F]

2

replies

why "samtools view" change the bam file

started 2016-12-15 02:34:42 UTC

2016-12-15 22:42:50 UTC

Michael Peng

3

replies

Samtools mpileup reference is different from input reference fasta

started 2016-12-14 05:56:17 UTC

2016-12-15 00:52:26 UTC

Jacob Ulirsch

2

replies

Information about the algorithm

started 2016-12-02 22:37:02 UTC

2016-12-02 23:02:21 UTC

Peter Cock

0

replies

bcftools merge automatically Left-align?

started 2016-12-01 12:02:54 UTC

2016-12-01 12:02:54 UTC

3***@zju.edu.cn

3

replies

Limit number of bam files Samtools1.3

started 2016-11-28 06:12:36 UTC

2016-12-01 03:16:34 UTC

h***@ecodev.vic.gov.au

1

reply

samtools-1.2 install problem

started 2016-11-26 17:39:23 UTC

2016-11-29 00:16:57 UTC

John Marshall

0

replies

Depth 0 though the region is covered!

started 2016-11-26 17:39:24 UTC

2016-11-26 17:39:24 UTC

Qiongxian Lu

0

replies

Error when using tview

started 2016-11-26 02:24:22 UTC

2016-11-26 02:24:22 UTC

Shannon Joslin

2

replies

bcftools merge : multiple rows per position

started 2016-11-21 20:12:27 UTC

2016-11-23 22:41:45 UTC

Davis, Steven

0

replies

bcftools Error

started 2016-11-21 16:44:25 UTC

2016-11-21 16:44:25 UTC

Kousik Kundu

2

replies

faidx error_could not build fai index

started 2016-11-18 14:04:46 UTC

2016-11-21 14:42:06 UTC

John Marshall